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Payroll Setup Checklist for an Australian Subsidiary

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A foreign parent can incorporate an Australian subsidiary quickly, but getting payroll right takes longer. Before the first pay run, the subsidiary needs:

  • PAYG withholding registration
  • Single Touch Payroll (STP) reporting
  • A super process that meets Payday Super
  • An award check for every role
  • Workers compensation cover
  • Payroll tax registration, once wages pass a state threshold

A gap in any of these can create a compliance problem that the parent's auditors find later.

Published: October 2026

Rules current as at: October 2026 (2026-27 financial year)

Who this applies to: Australian companies owned by an overseas parent that are about to employ staff in Australia. It does not cover contractors engaged from overseas, or entity setup. For entity setup, see setting up an Australian subsidiary.

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Why Australian Payroll Catches Foreign Parents Out

  • Modern awards. Industry and occupational awards set minimum pay and conditions for many roles, not just the employment contract.
  • Superannuation on top of salary. The super guarantee rate has been 12% since 1 July 2025. From 1 July 2026, under Payday Super, it is calculated on an employee's qualifying earnings and paid in addition to wages.
  • Payday Super. From 1 July 2026, super must be received by the employee's fund within 7 business days after each payday. Before this change it was paid quarterly.
  • State payroll tax. Each state and territory charges payroll tax above its own threshold. Grouped entities share one threshold.

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Before You Hire: Entity and Registrations

1. Confirm the entity is set up

The subsidiary needs an ACN and an ABN before it registers for payroll obligations.

2. Register for PAYG withholding

The employer must register for PAYG withholding before it first pays an amount it has to withhold tax from. Register through the Business Registration Service or the ATO's Online services for business.

3. Set up ATO online access

To use ATO online services for the entity, a person needs a myID (formerly myGovID) linked to the business in Relationship Authorisation Manager (RAM). Directors based overseas can find identity verification difficult, so start early. See how to set up myID and RAM.

4. Choose STP Phase 2 payroll software

Employers report payroll to the ATO through Single Touch Payroll. STP Phase 2 has been mandatory since 1 January 2022, and new employers report from their first pay run. Xero Payroll, Employment Hero and other Australian platforms support it. See our STP compliance guide.

5. Arrange workers compensation insurance

Workers compensation is arranged per state, not nationally. In NSW, for example, a policy is required if you expect to pay more than $7,500 in wages a year, or as soon as you employ an apprentice or trainee. Arrange cover before the first employee starts.

6. Open an Australian bank account for payroll

Pay employees in AUD from an Australian account. Fund it so it always covers wages, PAYG withholding and super.

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Before Each Hire: Employment Terms

7. Check award coverage for every role

Rule: If a modern award covers the work, its minimum pay and conditions apply, whoever owns the employer.

Employer action: Classify each role by its duties, autonomy and responsibilities, not its job title. For example, administrative roles may fall under the Clerks - Private Sector Award, and some engineering and IT roles under the Professional Employees Award. Paying above the award minimum doesn't remove the award's other conditions.

8. Write an Australian employment contract

Use a contract that complies with the Fair Work Act and the National Employment Standards. Overseas templates often miss Australian requirements on notice, leave and termination.

9. Issue the information statements

Every new employee must receive the Fair Work Information Statement. Casual employees also receive the Casual Employment Information Statement, and fixed-term employees the Fixed Term Contract Information Statement.

10. Collect onboarding details

Collect the tax file number declaration, bank details and super choice. If an employee doesn't choose a fund, check for a stapled super fund before using a default fund. See super stapling at onboarding.

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Every Pay Run: The Operating Rhythm

11. Calculate pay and withhold PAYG

Use the ATO tax tables built into your payroll software.

12. Report through STP

Report each pay run to the ATO through STP on or before payday.

13. Pay super on Payday Super timing

Rule: From 1 July 2026, super must be received by the employee's fund, with enough information to allocate it, within 7 business days after payday. For a new employee, the first contribution has 20 business days.

Employer action: Pay super in the same payment run as wages, so fund processing time doesn't push you past the deadline. See Payday Super is now live.

14. Pay PAYG withholding to the ATO

Small withholders usually pay with their BAS or IAS. Medium and large withholders pay more often.

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Payroll Tax: The Group Trap

Each state and territory has its own payroll tax threshold and rate. A subsidiary with three employees might assume it is well below any threshold, but that may not be true.

Under the grouping rules, related entities can form a group that shares one threshold. In NSW, the threshold is tested against total Australian wages, including those paid in other states. It is apportioned if the business also pays wages interstate, and pro-rated if it starts employing partway through the year.

Which state taxes the wages: the nexus rules

Who pays the wages, and from where, does not settle the question. Wages for services performed in Australia can be taxable wages even when the payer is overseas.

  • Services wholly in one state: in NSW, wages for services performed wholly in NSW in a month are taxable in NSW.
  • Services in more than one place: a sequence of tests decides which jurisdiction can tax the wages. In order: the employee's principal place of residence, then the employer's ABN address or principal place of business, then where the wages are paid, then where the services are mainly performed (more than 50% of the month).
  • Wages paid from overseas: Revenue NSW's ruling on expatriates (PTA 002) says wages paid outside Australia are subject to NSW payroll tax for any month in which the employee performs services mainly in NSW. Wages paid in NSW to an employee working overseas are taxable for assignments of up to 6 continuous months.

So an overseas parent that pays someone working in Sydney may have its own NSW payroll tax obligations, and those wages can count toward the group's threshold. Sources: Revenue NSW, nexus provisions and Revenue Ruling PTA 002. Other states have similar, but not identical, rules. See payroll tax grouping and state-by-state payroll tax thresholds and rates.

Hypothetical example: the first Sydney team

Assumptions: a US software company employs five staff in Sydney for a full year at $150,000 each. The 12% super guarantee applies. The subsidiary is not grouped with any other Australian employer, and NSW is the only state where it pays wages.

  • Salaries: 5 × $150,000 = $750,000
  • Super at 12%: $750,000 × 12% = $90,000
  • Wages plus super: $840,000

The NSW threshold for 2026-27 is $1,200,000 and the rate is 5.45% (Revenue NSW). At $840,000, the subsidiary is below the threshold.

If the team doubles to ten:

  • Wages plus super: $1,680,000
  • Amount above the threshold: $1,680,000 - $1,200,000 = $480,000
  • Payroll tax: $480,000 × 5.45% = $26,160 a year

Hypothetical example: adding a secondee paid by the parent

Assumptions: on top of the ten-person team above, the US parent seconds an employee to Sydney for 8 months and keeps paying them through its US payroll, at the equivalent of A$180,000 a year. In each of those months the secondee performs services mainly in NSW. For simplicity the example ignores any super or other benefits paid for the secondee, and assumes the parent and subsidiary are grouped.

  • Secondee's wages for 8 months: $180,000 × 8 ÷ 12 = $120,000
  • Group wages: $1,680,000 + $120,000 = $1,800,000
  • Amount above the threshold: $1,800,000 - $1,200,000 = $600,000
  • Payroll tax: $600,000 × 5.45% = $32,700 a year, which is $6,540 more than without the secondee

Superannuation contributions count as taxable wages in NSW. Run your own numbers in our employee cost calculator.

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Common Mistakes Foreign Parents Make

  • Copying the home-country contract. Notice periods, leave and termination terms often don't meet the National Employment Standards.
  • Treating a high salary as award-free. Some award conditions can still apply to well-paid staff, depending on the award and the role.
  • Paying super quarterly. Under Payday Super, the old quarterly rhythm no longer meets the deadline.
  • Ignoring wages paid offshore. Secondees and staff paid through the parent's payroll can still be taxable wages in Australia.
  • Registering late for payroll tax. Grouped wages can cross a threshold well before the subsidiary's own payroll does.
  • No local authorised person. Without someone set up in myID and RAM, the subsidiary can't easily deal with the ATO online.
  • Leave accruals left off the balance sheet. Australian annual leave accrues and carries over, so the liability builds from the first pay run.

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Year-End and Ongoing Obligations

  • STP finalisation by 14 July for the year just ended
  • Annual leave and long service leave: track accruals (long service leave rules vary by state)
  • Annual Wage Review increases, which apply from the first full pay period starting on or after 1 July
  • Payroll tax annual reconciliation in each state where you are registered
  • Workers compensation wage declarations each year

See the Australian reporting calendar for foreign-owned subsidiaries.

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Reporting Payroll to the Parent

Parent companies usually want payroll in their own chart of accounts, currency and reporting calendar. Map payroll accounts at the start so wages, super, payroll tax and leave accruals report cleanly into group results. See the monthly finance function for an Australian subsidiary.

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The Full Checklist

  1. Entity incorporated with an ACN and ABN
  2. PAYG withholding registration
  3. ATO online access (myID and RAM) for an authorised person
  4. STP Phase 2 payroll software
  5. Workers compensation insurance in each relevant state
  6. Australian bank account funded for payroll
  7. Award coverage checked for every role, based on duties
  8. Australian employment contract
  9. Fair Work Information Statement, plus the casual or fixed-term statement where relevant
  10. TFN declaration, bank details and super choice or stapled fund
  11. PAYG withheld each pay run
  12. STP lodged each pay run
  13. Super received by the fund within 7 business days (20 for a new employee's first contribution)
  14. PAYG remitted to the ATO on schedule
  15. Payroll tax grouping and threshold checked in each state
  16. Payroll mapped to group reporting

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FAQ

Does an Australian subsidiary need to register for PAYG withholding?

Yes. An employer must register before it first withholds tax from employees' pay.

What super does a subsidiary pay for Australian employees?

The super guarantee rate is 12% (it has been since 1 July 2025), paid on top of wages. From 1 July 2026, Payday Super calculates it on qualifying earnings, and the fund must receive it within 7 business days after each payday.

Do modern awards apply to employees of a foreign-owned company?

Yes. Award coverage depends on the work performed and the industry, not on who owns the employer.

When does a subsidiary have to pay payroll tax?

When its taxable wages, or those of its payroll tax group, exceed the threshold in a state or territory with a nexus to those wages. In NSW for 2026-27, the threshold is $1.2 million and the rate is 5.45%.

Are wages paid by the overseas parent subject to payroll tax?

They can be. Revenue NSW treats wages paid outside Australia as taxable in NSW for any month the employee performs services mainly in NSW (Revenue Ruling PTA 002).

What is STP finalisation?

The annual declaration through STP confirming each employee's year-end payroll data. It is due by 14 July.

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About Scale Suite

Scale Suite runs payroll, reporting and compliance for foreign-owned Australian entities, with CA oversight, as registered BAS Agents. Packages start from $1,500 per month with no lock-in.

Australian subsidiary finance | Outsourced payroll services | Pricing

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Disclaimer

This guide was current when written (October 2026) and is reviewed periodically. Scale Suite is a registered BAS Agent. We are not a licensed tax adviser or financial adviser. This content is general information only. It is not professional tax, financial or legal advice.

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Sources

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About Scale Suite

Scale Suite is a Sydney-based provider of outsourced finance and HR services for Australian SMEs. We deliver bookkeeping, financial reporting, payroll processing, fractional CFO support, recruitment, employee onboarding, people and culture support, and fractional HR oversight, all as a fully embedded team that works inside your business.

Employment Hero Gold Partner, CA-qualified, and Xero Certified, we replace fragmented finance and HR processes with one responsive, senior-level function at a fraction of the cost of full-time hires. We serve growing businesses across Sydney, Melbourne, Brisbane, and Perth, with packages starting from $1,500 per month and no lock-in contracts.

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